diff --git a/content/.gitkeep b/content/.gitkeep
new file mode 100644
index 000000000..e69de29bb
diff --git a/content/advanced/architecture.md b/docs/advanced/architecture.md
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diff --git a/content/advanced/creating components.md b/docs/advanced/creating components.md
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diff --git a/content/advanced/making plugins.md b/docs/advanced/making plugins.md
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diff --git a/content/advanced/paths.md b/docs/advanced/paths.md
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diff --git a/content/authoring content.md b/docs/authoring content.md
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diff --git a/content/build.md b/docs/build.md
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diff --git a/content/configuration.md b/docs/configuration.md
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diff --git a/content/features/Latex.md b/docs/features/Latex.md
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diff --git a/content/features/Mermaid diagrams.md b/docs/features/Mermaid diagrams.md
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diff --git a/content/features/Obsidian compatibility.md b/docs/features/Obsidian compatibility.md
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diff --git a/content/features/RSS Feed.md b/docs/features/RSS Feed.md
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diff --git a/content/features/SPA Routing.md b/docs/features/SPA Routing.md
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diff --git a/content/features/backlinks.md b/docs/features/backlinks.md
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diff --git a/content/features/callouts.md b/docs/features/callouts.md
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diff --git a/content/features/darkmode.md b/docs/features/darkmode.md
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diff --git a/content/features/folder and tag listings.md b/docs/features/folder and tag listings.md
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diff --git a/content/features/full-text search.md b/docs/features/full-text search.md
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diff --git a/content/features/graph view.md b/docs/features/graph view.md
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diff --git a/content/features/index.md b/docs/features/index.md
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diff --git a/content/features/popover previews.md b/docs/features/popover previews.md
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diff --git a/content/features/private pages.md b/docs/features/private pages.md
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diff --git a/content/features/recent notes.md b/docs/features/recent notes.md
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diff --git a/content/features/syntax highlighting.md b/docs/features/syntax highlighting.md
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diff --git a/content/features/table of contents.md b/docs/features/table of contents.md
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diff --git a/content/features/upcoming features.md b/docs/features/upcoming features.md
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diff --git a/content/features/wikilinks.md b/docs/features/wikilinks.md
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diff --git a/content/hosting.md b/docs/hosting.md
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diff --git a/content/images/dns records.png b/docs/images/dns records.png
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diff --git a/content/images/quartz layout.png b/docs/images/quartz layout.png
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diff --git a/content/images/quartz transform pipeline.png b/docs/images/quartz transform pipeline.png
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diff --git a/content/index.md b/docs/index.md
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diff --git a/content/layout.md b/docs/layout.md
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diff --git a/content/migrating from Quartz 3.md b/docs/migrating from Quartz 3.md
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diff --git a/content/philosophy.md b/docs/philosophy.md
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diff --git a/content/showcase.md b/docs/showcase.md
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diff --git a/content/tags/component.md b/docs/tags/component.md
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diff --git a/content/upgrading.md b/docs/upgrading.md
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diff --git a/quartz/bootstrap-cli.mjs b/quartz/bootstrap-cli.mjs
index 1656d758c..b9733171f 100755
--- a/quartz/bootstrap-cli.mjs
+++ b/quartz/bootstrap-cli.mjs
@@ -162,7 +162,6 @@ yargs(hideBin(process.argv))
             label: "Symlink an existing folder",
             hint: "don't select this unless you know what you are doing!",
           },
-          { value: "keep", label: "Keep the existing files" },
         ],
       }),
     )
@@ -176,6 +175,7 @@ yargs(hideBin(process.argv))
       }
     }
 
+    await fs.promises.unlink(path.join(contentFolder, ".gitkeep"))
     if (setupStrategy === "copy" || setupStrategy === "symlink") {
       const originalFolder = escapePath(
         exitIfCancel(
@@ -205,8 +205,6 @@ yargs(hideBin(process.argv))
         await fs.promises.symlink(originalFolder, contentFolder, "dir")
       }
     } else if (setupStrategy === "new") {
-      await rmContentFolder()
-      await fs.promises.mkdir(contentFolder)
       await fs.promises.writeFile(
         path.join(contentFolder, "index.md"),
         `---